{ "_id": "6ac78d36de46216d5edd218e", "Package": "ruv", "Title": "Detect and Remove Unwanted Variation using Negative Controls", "Description": "Implements the 'RUV' (Remove Unwanted Variation)\nalgorithms. These algorithms attempt to adjust for systematic\nerrors of unknown origin in high-dimensional data. The\nalgorithms were originally developed for use with genomic data,\nespecially microarray data, but may be useful with other types\nof high-dimensional data as well. These algorithms were\nproposed in Gagnon-Bartsch and Speed (2012)\n, Gagnon-Bartsch, Jacob and Speed\n(2013), and Molania, et. al. (2019) .\nThe algorithms require the user to specify a set of negative\ncontrol variables, as described in the references. The\nalgorithms included in this package are 'RUV-2', 'RUV-4',\n'RUV-inv', 'RUV-rinv', 'RUV-I', and RUV-III', along with\nvarious supporting algorithms.", "Version": "0.9.7.2", "Date": "2026-08-04", "Authors@R": "person(given = \"Johann\",\nfamily = \"Gagnon-Bartsch\",\nrole = c(\"aut\", \"cre\"),\nemail = \"johanngb@umich.edu\")", "License": "GPL", "URL": "http://www-personal.umich.edu/~johanngb/ruv/", "LazyLoad": "yes", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-08 12:24:39 UTC", "User": "root" }, "Author": "Johann Gagnon-Bartsch [aut, cre]", "Maintainer": "Johann Gagnon-Bartsch ", "Repository": "https://johanngb.r-universe.dev", "Date/Publication": "2026-08-31 23:56:35 UTC", "RemoteUrl": "https://github.com/cran/ruv", "RemoteRef": "HEAD", "RemoteSha": "dea5e535c5896ba6ab8e4c59deccf05b85290759", "_user": "johanngb", "_type": "src", "_file": "ruv_0.9.7.2.tar.gz", "_fileid": "https://r2.ropensci.org/94f9b314142c2bcd96785fd9a1681855aecbb3ac5fe5f656deacae9107bc4d93", "_filesize": 238460, "_sha256": "94f9b314142c2bcd96785fd9a1681855aecbb3ac5fe5f656deacae9107bc4d93", "_expires": "2027-01-16T12:31:48.000Z", "_created": "2026-10-08T12:24:39.000Z", "_published": "2026-10-08T12:31:50.576Z", "_buildurl": "https://github.com/r-universe/johanngb/actions/runs/37776320933", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113309255814, "time": 121, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11549889584" }, { "job": 113309255803, "time": 132, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11549614668" }, { "job": 113309255779, "time": 113, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11550186792" }, { "job": 113309255758, "time": 128, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11550261442" }, { "job": 113309255781, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11549469906" }, { "job": 113309255909, "time": 228, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11550571170" }, { "job": 113309255798, "time": 118, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11549419820" }, { "job": 113309256003, "time": 294, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11551300216" }, { "job": 113308162185, "time": 163, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11550440760" }, { "job": 113309255715, "time": 103, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11549399724" }, { "job": 113309256094, "time": 389, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11550207290" }, { "job": 113309255788, "time": 114, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11550266103" }, { "job": 113309255893, "time": 103, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11549479581" }, { "job": 113309255927, "time": 197, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11550511072" }, { "job": 113309256114, "time": 97, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11550465884" } ], "_upstream": "https://github.com/cran/ruv", "_commit": { "id": "dea5e535c5896ba6ab8e4c59deccf05b85290759", "author": "Johann Gagnon-Bartsch ", "committer": "cran-robot ", "message": "version 0.9.7.2\n", "time": 1788220595 }, "_maintainer": { "name": "Johann Gagnon-Bartsch", "email": "johanngb@umich.edu", "login": "johanngb", "description": "I am an Assistant Professor in the Department of Statistics at the University of Michigan. 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Plot", "topics": [ "ruv_rle" ] }, { "page": "ruv_scree", "title": "RUV Scree Plot", "topics": [ "ruv_scree" ] }, { "page": "ruv_shiny", "title": "RUV Shiny App", "topics": [ "ruv_shiny" ] }, { "page": "ruv_summary", "title": "RUV Summary", "topics": [ "ruv_summary" ] }, { "page": "ruv_svdgridplot", "title": "RUV SVD Grid Plot", "topics": [ "ruv_svdgridplot" ] }, { "page": "ruv_svdplot", "title": "RUV SVD Plot", "topics": [ "ruv_svdplot" ] }, { "page": "ruv_varianceplot", "title": "RUV Variance Plot", "topics": [ "ruv_varianceplot" ] }, { "page": "ruv_volcano", "title": "RUV Volcano Plot", "topics": [ "ruv_volcano" ] }, { "page": "RUV2", "title": "Remove Unwanted Variation, 2-step", "topics": [ "RUV2" ] }, { "page": "RUV4", "title": "Remove Unwanted Variation, 4-step", "topics": [ "RUV4" ] }, { "page": "RUVI", "title": "RUV-I", "topics": [ "RUV1", "RUVI" ] }, { "page": "RUVIII", "title": "RUV-III", "topics": [ "RUVIII" ] }, { "page": "RUVinv", "title": "Remove Unwanted Variation, 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